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Home » Recipes » Muffins & Quick Breads

Vegan Whole Wheat Blueberry Muffins

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Modified: Aug 31, 2026 · Published: Jul 30, 2018 by Melissa · This post may contain affiliate links · Leave a Comment
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Vegan Whole Wheat Blueberry Muffins bursting with fresh blueberries and no refined sugar. A healthy breakfast for busy mornings plus you can freeze them! 

Whole Wheat Blueberry Muffins on a small plate. There is is a bowl of blueberries to the right and tea on the left.

We have just over a week until the kids head back to school so I'm busy coming up with easy, healthy breakfasts that can be made ahead to help out on the busy mornings to come. The kids always need a couple of weeks to transition back into the school morning routine so having a no fuss meal that takes only a few minutes to prep is essential for us. These Vegan Whole Wheat Blueberry Muffins are a great quick, healthy breakfast for those kind of mornings.

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  • Ingredients
  • Instructions
  • Storage
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Interior of Vegan Whole Wheat Blueberry Muffin sitting on a plate.

Ingredients

These muffins are made with whole wheat flour so they're higher in fiber and more nutrient rich than muffins made with white flour. Plus they're filled with plenty of delicious fresh blueberries and  sweetened with a combination of maple syrup and coconut sugar, so you won't get the sugar crash that comes along with typical muffins. Try one with a smear of peanut butter or nut butter for an even more satisfying breakfast bite!

  • non dairy milk
  • chia or flax seed
  • coconut sugar
  • maple syrup
  • coconut oil
  • vanilla 
  • whole wheat flour
  • baking powder
  • salt
  • blueberries

See recipe card for quantities.

Close up of a bowl of blueberries.

Instructions

These muffins are so easy to make. Start by making a flax or chia egg, check out this guide for more info. Then combine dry ingredients in a bowl and wet ingredients in another. Combine the wet and dry ingredients then fold in blueberries. Scoop batter into a muffin pan with liners. Bake until golden and a toothpick inserted comes out clean.

Storage

Store muffins in an airtight container on the counter for 1-2 days or in the fridge for 3-4 days.

To Freeze: After baking, allow the muffins to cool completely and place on a freezer safe dish and pop in the freezer for a couple of hours. After the muffins are frozen transfer them to a zip top bag or freezer safe container with a lid. The muffins should keep for up to a month.

To Thaw: Place desired number of muffins on a microwave safe plate and use the defrost function to quickly thaw or just allow to sit out at room temperature.

Did you make this recipe? Let me know what you think! Leave a review and rating in the comments below. This helps me continue to provide great recipes for you.

Recipe

Overhead view of a plate with four Simple Vegan Blueberry Muffins. There is also a bowl of blueberries and mug of tea partially visible in the image.

Whole Wheat Blueberry Muffins

Melissa
Vegan Whole Wheat Blueberry Muffins bursting with fresh blueberries and no refined sugar. A healthy breakfast for busy mornings plus you can freeze them! 
Print Recipe Pin Recipe
Course Breakfast
Servings 12 muffins

Ingredients
  

  • ¾ cup non dairy milk, room temperature I used almond milk.
  • 1 chia or flax egg see notes below for instructions
  • ¼ cup coconut sugar
  • ¼ cup maple syrup
  • ¼ cup coconut oil
  • 1 teaspoon vanilla
  • 1 ⅓ cup whole wheat flour
  • 2 teaspoon baking powder
  • ½ teaspoon salt
  • 1 cup blueberries

Instructions
 

  • Preheat oven to 350 degrees and place reusable or paper liners in a muffin pan. Set aside. 
  • Prepare chia or flax egg and set aside. 
  • In a large bowl combine flour, baking powder and salt. 
  • In another bowl combine nondairy milk, coconut sugar, maple syrup, oil, vanilla and prepared chia or flax egg.
  • Pour milk mixture into dry ingredients and stir just to combine. 
  • Add blueberries and gently fold them in to batter. 
  • Scoop batter into prepared muffin pan and bake for 20 - 24 minutes or until muffins are lightly golden in color and a toothpick inserted comes out clean. 
  • Allow to cool in the pan for a few minutes and then transfer each muffin to a cooling rack to cool completely. 

Notes

  • For a chia egg: whisk together 1 tablespoon ground chia seeds and 3 tablespoon water.  Set aside for 1-2 minutes to thicken. For a flax egg: whisk together 1 tablespoon ground flax seed with 2 tablespoon water. For further instruction see this post.
  • I used fresh blueberries, but you could also use frozen. Do not thaw before adding to batter. 
  • To freeze muffins - allow to cool completely and place in the freezer on a small baking sheet or other freezer safe dish for a couple of hours. Then transfer to a freezer safe lidded container or zip top bag. 
  • To thaw muffins - place desired number on a microwave safe plate and use the defrost function or allow to sit out at room temperature. 

More Muffins & Quick Breads

  • Blueberry Crumble Muffins
  • Vegan Breakfast Muffins
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    Cinnamon Raisin Soda Bread
  • Close up side view of Baked Spinach Doughnut Holes.
    Baked Spinach Doughnut Holes

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Hi, I'm Melissa!

Longtime vegan and mom of four little vegans. I share simple recipes our family loves and my tips for raising healthy, happy vegan kids.

About me

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